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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10248388_10248642_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10248388 - 10248642
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTTTTTTATCT
Flanking Amino Acid:
RRSEYRVIVSGLPPSGSWQD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.75
0.8
77.7
35.8
Minor 5ss
30.1
-2.3
2.9
33
41.8
Minor BPS
62.4
0.47
1.6
75.62
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023990
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023608
10247739 - 10249307
1569