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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10248816_10249084_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10248816 - 10249084
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTATTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTCTATTCAATA
Flanking Amino Acid:
LDNTKFRSHEGETAYIRVKV
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
35
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
66.9
0.38
0.9
62.5
38.3
Minor 5ss
40.1
-1.1
3
53.2
44.1
Minor BPS
50
-0
1.7
61.09
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023990
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023608
10247739 - 10249307
1569