About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10273482_10274478_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10273482 - 10274478
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTGTCCTTCATA
Flanking Amino Acid:
HSTERPFKCQTCTAAFATKD
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
34.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
70.7
0.47
0.9
65.5
35.3
Minor 5ss
33.6
-1.9
3.7
48.1
42
Minor BPS
70.1
0.62
1.7
78.89
38.3

Associated Gene:

Gene:
VEZF1
Ensembl Gene ID:
ENSAPLG00000011422
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011921
10271300 - 10278855
7556