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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10285901_10294739_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10285901 - 10294739
Intron Length:
8839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
CTTTCTCTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
72.7
0.51
0.8
63.9
36.7
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
57.3
0.31
2
80.09
42.2

Associated Gene:

Gene:
CUEDC1
Ensembl Gene ID:
ENSAPLG00000026352
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017317
10285477 - 10306264
20788