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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10294806_10302037_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10294806 - 10302037
Intron Length:
7232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGTGT
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
ACTTTTGTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
61.5
45.6
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
71.8
0.49
0.8
64.6
31
Minor 5ss
42.9
-0.8
3.5
65.1
46.1
Minor BPS
51
0.11
2
71.87
39.9

Associated Gene:

Gene:
CUEDC1
Ensembl Gene ID:
ENSAPLG00000026352
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017317
10285477 - 10306264
20788
ENSAPLT00000012133
10289898 - 10307937
18040
ENSAPLT00000034139
10289898 - 10307138
17241
ENSAPLT00000025863
10289898 - 10306264
16367