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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10303055_10303909_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10303055 - 10303909
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCCAA
U12 Branch Point Sequence:
CCTGGCCCAAGG
Flanking Amino Acid:
CPRAPPTPPPRTDVPGPGRY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
42.2
-0.4
1.3
44.1
40.8
Major PPT
79.5
0.66
0.8
74.1
31.1
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
33.9
-1.3
2.2
35.27
45.9

Associated Gene:

Gene:
CUEDC1
Ensembl Gene ID:
ENSAPLG00000026352
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026074
10302038 - 10311541
9504
ENSAPLT00000025863
10289898 - 10306264
16367
ENSAPLT00000017317
10285477 - 10306264
20788
ENSAPLT00000034139
10289898 - 10307138
17241
ENSAPLT00000012133
10289898 - 10307937
18040
ENSAPLT00000032070
10289898 - 10306264
16367