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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10304019_10305193_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10304019 - 10305193
Intron Length:
1175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAA
U12 Branch Point Sequence:
CGTGCCCAACCT
Flanking Amino Acid:
ILPQQAPRTQGSPGCRQPVP
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
49.1
-0
1.3
58.4
40.3
Major PPT
65.3
0.34
1
56.8
38.7
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
42.1
-0.5
2.2
60.76
48.5

Associated Gene:

Gene:
CUEDC1
Ensembl Gene ID:
ENSAPLG00000026352
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017317
10285477 - 10306264
20788
ENSAPLT00000034139
10289898 - 10307138
17241
ENSAPLT00000012133
10289898 - 10307937
18040
ENSAPLT00000032070
10289898 - 10306264
16367
ENSAPLT00000026074
10302038 - 10311541
9504
ENSAPLT00000025863
10289898 - 10306264
16367