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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10305378_10305830_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10305378 - 10305830
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTGACCAAGCA
Flanking Amino Acid:
NRDFLLALERDRLKYESKKS
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
39.1
-0.8
2.2
52.65
45.3

Associated Gene:

Gene:
CUEDC1
Ensembl Gene ID:
ENSAPLG00000026352
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012133
10289898 - 10307937
18040
ENSAPLT00000034139
10289898 - 10307138
17241
ENSAPLT00000026074
10302038 - 10311541
9504