Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10307756_10308232_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10307756 - 10308232

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

CAGCCCCCATCT

Flanking Amino Acid:

LLDDVEGHSCDEDFQARRQQ

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

66.4

39.5

Major BPS

48.9

-0

1.3

39.1

Major PPT

77.5

0.62

0.9

73.4

37.1

Minor 5ss

32.7

-2

3.1

43.6

Minor BPS

41.8

-0.5

55.9

45.6

Associated Gene:

Gene:

CUEDC1

Ensembl Gene ID:

ENSAPLG00000026352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026074

10302038 - 10311541

9504