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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10315134_10315303_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10315134 - 10315303
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
ATTTTTTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AAAACCTGAACT
Flanking Amino Acid:
DILYPEDAVRAKFYRVYGSG
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
62.8
38.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
76.7
0.6
1
74.5
39.4
Minor 5ss
37
-1.5
2.8
40.5
38.7
Minor BPS
64.1
0.52
1.5
75.18
40.3

Associated Gene:

Gene:
MRPS23
Ensembl Gene ID:
ENSAPLG00000017268
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048262
10314843 - 10318828
3986