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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10320534_10324650_F

Intron Information:

Intron Rank:
132003
Intron Class:
major
Intron Phase:
Intron Coordinates:
10320534 - 10324650
Intron Length:
4117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
ATCCCATCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
34.4
-1.8
3.4
47.2
43.5
Minor BPS
46
-0.2
2
65.91
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020891
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042615
10320190 - 10325430
5241