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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10324239_10324650_F

Intron Information:

Intron Rank:
132001
Intron Class:
major
Intron Phase:
Intron Coordinates:
10324239 - 10324650
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
ATCCCATCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1.1
80.2
30.7
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
46
-0.2
2
65.91
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020891
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032456
10323932 - 10335649
11718