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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10586649_10586977_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10586649 - 10586977
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAT
U12 Branch Point Sequence:
TGCACGCTAATG
Flanking Amino Acid:
MTRGAALLAQVTNYDNATGL
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
65.8
40.2
Major BPS
67
0.42
1.2
67.3
37.8
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
30.3
-2.3
3.4
39.7
46.3
Minor BPS
42.8
-0.6
2.3
49.4
44.4

Associated Gene:

Gene:
AKAP1
Ensembl Gene ID:
ENSAPLG00000014520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015133
10585731 - 10609501
23771