About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10587052_10588515_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10587052 - 10588515
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATATCTAATTT
Flanking Amino Acid:
VLLDNVVPLPDEDHFSSEAD
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
65.9
39.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.3
0.59
1
78.4
27.7
Minor 5ss
28.6
-2.4
3.5
37.4
47.3
Minor BPS
46.8
-0.1
1.9
63.65
41

Associated Gene:

Gene:
AKAP1
Ensembl Gene ID:
ENSAPLG00000014520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015133
10585731 - 10609501
23771