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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10588584_10589185_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10588584 - 10589185
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTCTAGC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGTTCTTAACT
Flanking Amino Acid:
RVKIDTLRQIRSDFVTLPFQ
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.4
59.7
45.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.1
0.72
0.9
87
24.1
Minor 5ss
43.1
-0.8
2.4
55.4
41.7
Minor BPS
83
1.11
1
89.94
34.1

Associated Gene:

Gene:
AKAP1
Ensembl Gene ID:
ENSAPLG00000014520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015133
10585731 - 10609501
23771