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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10589337_10590007_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10589337 - 10590007
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAATGCTGAGCC
Flanking Amino Acid:
GIPTLPTPVEVGIICAAPGL
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
89.2
28.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.9
0.74
0.9
77.1
37.1
Minor 5ss
25.7
-2.8
3.6
35.8
41.1
Minor BPS
47.6
-0.2
2.1
61.82
42.9

Associated Gene:

Gene:
AKAP1
Ensembl Gene ID:
ENSAPLG00000014520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015133
10585731 - 10609501
23771