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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10590186_10591239_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10590186 - 10591239
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
CTCCCTGTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAAACACTAATG
Flanking Amino Acid:
TLHSLPMTSWLMLPDGVTVE
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
67.1
44.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
67.8
0.4
1
64
36.7
Minor 5ss
42
-0.9
3.1
51.7
45
Minor BPS
46
-0.4
2
52.86
41.1

Associated Gene:

Gene:
AKAP1
Ensembl Gene ID:
ENSAPLG00000014520
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015133
10585731 - 10609501
23771