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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10619755_10626899_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10619755 - 10626899
Intron Length:
7145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
CGGGGCTAACCT
Flanking Amino Acid:
TSLATSQHSPGIDKENVELS
Intron Amino Acid Position:
2751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
76.2
39.9
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
77.6
0.62
0.9
69.5
41.6
Minor 5ss
31.5
-2.1
2.5
37.7
39.6
Minor BPS
39.2
-0.7
2.2
51.35
49

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000038614
10619612 - 10696896
77285
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000037182
10619612 - 10696896
77285
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000024564
10619018 - 10696896
77879