Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10628885 - 10630304

Intron Length:

1420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

TTCTTTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAAAAT

U12 Branch Point Sequence:

TTTGTAGGAAAA

Flanking Amino Acid:

SVVFPKVFPVVHNLLDSKIN

Intron Amino Acid Position:

2615

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

78.2

36.4

Major BPS

0.1

59.7

32.6

Major PPT

88.7

0.87

0.6

88.9

20.4

Minor 5ss

42.3

-0.9

2.8

55.7

41.6

Minor BPS

40.4

-0.7

2.3

58.16

41.2

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10628885_10630304_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: