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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10631210_10631912_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10631210 - 10631912
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTATCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATCT
Flanking Amino Acid:
RRVAENDYEMETQRISPQQH
Intron Amino Acid Position:
2539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
71.2
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.4
0.68
1
77.5
36.5
Minor 5ss
27.9
-2.5
2.8
26.6
36.4
Minor BPS
68.3
0.65
1.5
82.72
39.3

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000038614
10619612 - 10696896
77285
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000030748
10620205 - 10696896
76692