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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10634030_10634558_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10634030 - 10634558
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTCTTTGAATT
Flanking Amino Acid:
VNTQSVAYLAALLTVSEEVR
Intron Amino Acid Position:
2400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
77.5
0.62
0.9
74.6
40
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
65.5
0.57
1.3
81.72
33.6

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000037182
10619612 - 10696896
77285
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000030748
10620205 - 10696896
76692