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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10634030_10635263_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10634030 - 10635263
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTCTTTGAATT
Flanking Amino Acid:
NFALVGHLLKALLTVSEEVR
Intron Amino Acid Position:
2341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
77.5
0.62
0.9
74.6
40
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
65.5
0.57
1.3
81.72
33.6

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038614
10619612 - 10696896
77285