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Intron Name: Anas_platyrhynchos_platyrhynchos_20_1063442_1075882_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1063442 - 1075882

Intron Length:

12441

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTGTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TTAAAATAAGCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

73.8

0.59

0.9

26.8

Major PPT

71.4

0.48

64.1

41.5

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

40.8

-0.7

2.1

54.68

42.5

Associated Gene:

Gene:

CALN1

Ensembl Gene ID:

ENSAPLG00000015773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018456

1062585 - 1185379

122795