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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10636113_10637652_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10636113 - 10637652
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TTTTCCTTCTCC
Flanking Amino Acid:
LTKLQPLLNKDSPMHKALFW
Intron Amino Acid Position:
2267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
48.8
-0.1
3.6
82.19
38.3

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000038614
10619612 - 10696896
77285
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000037182
10619612 - 10696896
77285
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000030748
10620205 - 10696896
76692