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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10636113_10638637_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10636113 - 10638637
Intron Length:
2525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAGG
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TTTTCCTTCTCC
Flanking Amino Acid:
IKQIIRILSKDSPMHKALFW
Intron Amino Acid Position:
2233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
67.7
43.2
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
40.6
-1.1
2.7
51.1
45.4
Minor BPS
48.8
-0.1
3.6
82.19
38.3

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021367
10619612 - 10696896
77285