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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10638753_10638878_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10638753 - 10638878
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TGTTTCTTCACA
Flanking Amino Acid:
WLDQWTELAQKFAFQYNPSL
Intron Amino Acid Position:
2194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.2
37
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
49.7
-0
2.4
66.6
38.9
Minor BPS
69.5
0.61
1.7
79.59
36.6

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000038614
10619612 - 10696896
77285
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000037182
10619612 - 10696896
77285
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000030748
10620205 - 10696896
76692