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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10640903_10641818_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10640903 - 10641818
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATTAT
U12 Branch Point Sequence:
TTTTCTCTGACA
Flanking Amino Acid:
QAKIWGSLGQITDLLDVVLD
Intron Amino Acid Position:
1962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
59.2
0.23
1.3
52
43.5
Major PPT
83.2
0.75
0.9
80.4
31.7
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
69.9
0.62
1.6
83.23
30.5

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022917
10619569 - 10696896
77328
ENSAPLT00000037182
10619612 - 10696896
77285
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000030748
10620205 - 10696896
76692
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000038614
10619612 - 10696896
77285