Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10642013 - 10642974

Intron Length:

962

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

ATTTTTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GAATTTTTATTT

Flanking Amino Acid:

EECISGFSKSSIELKHLCLE

Intron Amino Acid Position:

1897

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

76.9

31.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.2

0.86

0.8

86.3

32.1

Minor 5ss

37.9

-1.4

2.7

47.4

36.1

Minor BPS

53.7

0.2

1.5

66.07

38.9

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10642013_10642974_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: