Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10644920 - 10666470

Intron Length:

21551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GTTTTCTTACAG

Flanking Amino Acid:

GNPVFYYIARRFKTGQINGD

Intron Amino Acid Position:

1571

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

69.9

42.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

89.6

0.89

0.7

84.2

30.9

Minor 5ss

32.9

-2

3.4

48.3

47.3

Minor BPS

57.3

0.09

1.8

64.96

42.7

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10644920_10666470_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: