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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10648899_10648976_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10648899 - 10648976
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTCTGACAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACAA
Flanking Amino Acid:
TTWSKEMCEDIVIANKMSYL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.1
0.5
1
67.1
38
Minor 5ss
41
-1
3
59.3
39
Minor BPS
49.9
-0
1.8
66.07
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029126
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030468
10647460 - 10649287
1828