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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10656168_10656905_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10656168 - 10656905
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
79.1
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
44.3
-0.6
2.8
59.1
45.3
Minor BPS
52.7
0.16
1.7
70.48
40.6

Associated Gene:

Gene:
OMG
Ensembl Gene ID:
ENSAPLG00000001398
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001388
10656135 - 10658983
2849