Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10676233 - 10676781

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAACAGT

5'SS Class:

major

3'SS Sequence:

TCTTTTTCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TCTGTTTTAACT

Flanking Amino Acid:

LMEAKSQLFLKYFTLFMNLL

Intron Amino Acid Position:

1064

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

68.8

42.1

Major BPS

89.7

0.98

0.7

89.9

Major PPT

0.88

0.6

20.3

Minor 5ss

42.2

-0.9

57.4

41.5

Minor BPS

72.1

0.77

1.3

82.56

39.6

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10676233_10676781_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: