Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10677434 - 10677844

Intron Length:

411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

CTATATTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

GTTTTTGTATCT

Flanking Amino Acid:

DLSFCQEMKFRNKMVEYLTD

Intron Amino Acid Position:

997

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

77.7

0.62

0.9

71.9

37.5

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

49.5

0.04

2.2

75.62

41.6

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10677434_10677844_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: