Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10677968 - 10678503

Intron Length:

536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGCTTTTTATCT

Flanking Amino Acid:

SIETMMLNLVRYVRVLGNLV

Intron Amino Acid Position:

956

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.3

0.93

0.7

89.8

25.3

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

61.8

0.45

1.6

75.62

41.6

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10677968_10678503_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: