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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10686882_10687913_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10686882 - 10687913
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAGACT
5'SS Class:
major
3'SS Sequence:
CTCTCATGGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTG
Flanking Amino Acid:
GAHPAIRMTPMPTSHCFAWQ
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
69.8
40.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
65.4
0.35
1.1
65.2
40.2
Minor 5ss
34.7
-1.7
3.3
50.4
45.8
Minor BPS
55.1
0.02
1.7
58.01
44.6

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000022917
10619569 - 10696896
77328