Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10688046 - 10688916

Intron Length:

871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCATTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTGTTTTCATT

Flanking Amino Acid:

VNSLHRIITNSALDWWPKID

Intron Amino Acid Position:

370

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.5

28.7

Major BPS

100

1.24

0.5

100

Major PPT

79.1

0.65

0.8

71.1

39.6

Minor 5ss

45.3

-0.5

2.8

64.3

39.9

Minor BPS

50.7

0.1

1.8

71.21

40.9

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10688046_10688916_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: