Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10688992 - 10689293

Intron Length:

302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAACA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTATTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATGTCCCTAAGT

Flanking Amino Acid:

INPHNNQHFKICLAQNSPST

Intron Amino Acid Position:

345

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.5

28.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.1

0.75

0.8

78.9

33.6

Minor 5ss

28.3

-2.5

2.7

32.3

41.9

Minor BPS

59.8

0.38

79.14

42.8

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10688992_10689293_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: