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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10689417_10689878_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10689417 - 10689878
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATAT
Flanking Amino Acid:
LVQSMVVDLKNLLFNPSKPF
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.4
0.6
0.9
75.1
39.1
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
48
-0
2.3
76.11
41

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021283
10619569 - 10696896
77328
ENSAPLT00000030748
10620205 - 10696896
76692
ENSAPLT00000019412
10619018 - 10696896
77879
ENSAPLT00000028988
10619018 - 10696896
77879
ENSAPLT00000038614
10619612 - 10696896
77285
ENSAPLT00000015363
10619569 - 10696896
77328
ENSAPLT00000024564
10619018 - 10696896
77879
ENSAPLT00000021367
10619612 - 10696896
77285
ENSAPLT00000037182
10619612 - 10696896
77285