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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10689417_10690673_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10689417 - 10690673
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATAT
Flanking Amino Acid:
DVVEETKMNKNLLFNPSKPF
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.4
0.6
0.9
75.1
39.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
48
-0
2.3
76.11
41

Associated Gene:

Gene:
NF1
Ensembl Gene ID:
ENSAPLG00000014612
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022917
10619569 - 10696896
77328