Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10694661 - 10696761

Intron Length:

2101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCAAAT

U12 Branch Point Sequence:

AACTACCAAATG

Flanking Amino Acid:

LDALEKCLAGQPKDTMRLDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

72.7

44.5

Major BPS

55.9

0.15

61.2

32.6

Major PPT

89.3

0.88

0.7

88.9

28.2

Minor 5ss

34.7

-1.7

2.6

34.3

41.4

Minor BPS

41.6

-0.7

44.56

41.4

Associated Gene:

Gene:

NF1

Ensembl Gene ID:

ENSAPLG00000014612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021367

10619612 - 10696896

77285

ENSAPLT00000030748

10620205 - 10696896

76692

ENSAPLT00000021283

10619569 - 10696896

77328

ENSAPLT00000028988

10619018 - 10696896

77879

ENSAPLT00000019412

10619018 - 10696896

77879

ENSAPLT00000024564

10619018 - 10696896

77879

ENSAPLT00000038614

10619612 - 10696896

77285

ENSAPLT00000015363

10619569 - 10696896

77328

ENSAPLT00000022917

10619569 - 10696896

77328

ENSAPLT00000037182

10619612 - 10696896

77285

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10694661_10696761_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: