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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10716060_10716125_R

Intron Information:

Intron Rank:
135339
Intron Class:
major
Intron Phase:
Intron Coordinates:
10716060 - 10716125
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATACTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
76.7
0.6
0.9
74.1
36
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
62
0.45
1.9
81.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020221
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045443
10714421 - 10716913
2493