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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10731864_10732182_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10731864 - 10732182
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
GTTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AGTTTCTTACTG
Flanking Amino Acid:
FPPRVNEKLIARSRTVGELL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.3
0.82
0.8
77.7
36.7
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
58.1
0.12
1.7
61.81
40.6

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020690
10731151 - 10735696
4546
ENSAPLT00000018292
10731151 - 10736441
5291
ENSAPLT00000016515
10731151 - 10739842
8692
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000021591
10731151 - 10739842
8692