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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10732352_10733311_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10732352 - 10733311
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGATAA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGCTCTTTATAT
Flanking Amino Acid:
LVPWSQCLNNFLLHGTKNVA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.7
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
39.8
-1.1
3.1
53.2
45
Minor BPS
52.3
0.15
1.7
66.6
43.9

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018292
10731151 - 10736441
5291
ENSAPLT00000016515
10731151 - 10739842
8692
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000021591
10731151 - 10739842
8692
ENSAPLT00000020690
10731151 - 10735696
4546