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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10733581_10734024_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10733581 - 10734024
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGT
5'SS Class:
major
3'SS Sequence:
TTTCATGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAAAC
Flanking Amino Acid:
GRIKIWDVYTGKLLLNLMDH
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
63.7
43.1
Major BPS
100
1.24
0.5
100
0
Major PPT
67
0.38
1.1
62.6
42.1
Minor 5ss
36.4
-1.5
3.7
55.4
48.8
Minor BPS
62.4
0.37
1.8
78.5
36

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018292
10731151 - 10736441
5291
ENSAPLT00000016515
10731151 - 10739842
8692
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000021591
10731151 - 10739842
8692
ENSAPLT00000020690
10731151 - 10735696
4546