About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10737024_10737380_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10737024 - 10737380
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTCTTTATCT
Flanking Amino Acid:
PYIGVILMDFGHLFPPPTPI
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.7
0.8
0.8
77.8
35.6
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
73.4
0.81
1.5
87.39
38.7

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000016515
10731151 - 10739842
8692