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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10737495_10738065_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10737495 - 10738065
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATTCTAACT
Flanking Amino Acid:
GLHIASLADDKMVRFWRIDE
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
58.7
0.35
1.7
77.98
38.1

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000016515
10731151 - 10739842
8692