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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10738174_10738682_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10738174 - 10738682
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTACTT
Flanking Amino Acid:
FSTDGSVLAAGTQDGSVYFW
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
84.7
32.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.7
0.71
0.9
77.1
37.1
Minor 5ss
28.5
-2.5
3.8
34
41.5
Minor BPS
59.5
0.38
1.8
78.91
37.7

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025324
10731824 - 10740703
8880
ENSAPLT00000021591
10731151 - 10739842
8692
ENSAPLT00000016515
10731151 - 10739842
8692