About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10738813_10740598_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10738813 - 10740598
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGTGGAG
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTTCTCTATT
Flanking Amino Acid:
QVKNLPIPSKCLFGQKDKVS
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.1
46.6
37.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.9
0.81
0.8
80.5
30
Minor 5ss
23.5
-3
3.5
27.5
38.3
Minor BPS
61
0.43
1.8
83.71
37.3

Associated Gene:

Gene:
WSB1
Ensembl Gene ID:
ENSAPLG00000015816
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025324
10731824 - 10740703
8880