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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10829657_10830433_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10829657 - 10830433
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CATCTCTGAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
73.1
0.52
0.9
65.8
40
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
56.2
0.19
1.4
62.54
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016087
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016806
10828537 - 10832051
3515