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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10830568_10830997_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10830568 - 10830997
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
69
0.43
1
66.4
38.5
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
75.5
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016087
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016806
10828537 - 10832051
3515